marc@mdeller:~$ whoami
Marc C. Deller, D.Phil.
— Structural biologist working in drug discovery. This is where the tools I build end up: small web apps for people who work with protein structures. Free, no sign-up, nothing to install.main site → marcdeller.com "Hidden Architecture: Mapping Biology’s Structure"
marc@mdeller:~$
ls -la apps/
# 15 live, 0 building- ●GATECRASHER # four published drug discovery campaigns in one shell: the pocket, the SAR, every designed edit, and the structural basis of selectivity github.com/bellcheddar/GATECRASHER
- ●PUNT # A fantasy football companion for a ten-team bar league: live spoken commentary, win probability, playoff odds and a Monday card pack github.com/bellcheddar/PUNT
- ●chatMCD # Ask about Marc C. Deller and get an answer in the third person, drawn from his own papers, patents, thesis and notes: hybrid retrieval over 3,643 question-shaped units, a base model with no fine-tuning, and a decline when the corpus genuinely does not know github.com/bellcheddar/chatMCD
- ●GOBSMACKED # fold, dock, relax and annotate a protein-ligand complex on your own GPU, then find the crystal structure and get graded on how close you got, and why github.com/bellcheddar/GOBSMACKED
- ●ALPHABETTI # a protein sequence logo in 3D, wrapped around its own predicted structure. The amino acid letters themselves, stacked by how strongly a language model expects them, with no multiple sequence alignment anywhere github.com/bellcheddar/ALPHABETTI
- ●ButtFold # a protein folds in your browser and the trajectory becomes music: contacts forming are note onsets, hydropathy sets pitch, secondary structure sets texture. The web version of PhoneFold github.com/bellcheddar/ButtFold
- ●CODSWALLOP # every PDB entry for a protein family in one place: what was actually made, what it bound, what crystallised, and which residues nobody has ever seen github.com/bellcheddar/CODSWALLOP
- ●TopPDBLX # every crystallisation condition in the protein data bank, parsed and indexed: what worked, how often, and how little of it is specific to your protein github.com/bellcheddar/TopPDBLX
- ●FlexAppeal # Set up protein molecular dynamics without writing the script: every OpenMM option explained, a self-contained bundle to run on your own machine, and interactive trajectory analysis github.com/bellcheddar/FlexAppeal
- ●AlphaFraud # Catch AlphaFold where the fold is wrong: weekly, automatically, on freshly deposited human structures github.com/bellcheddar/AlphaFraud
- ●BoltzMaker # Build and analyze Boltz-2 protein structure prediction campaigns: a guided input wizard, YAML generation, and full result analysis with confidence/affinity dashboards -- no GPU required github.com/bellcheddar/BoltzMaker
- ●ChatPDB # A protein-structure-literate AI assistant for analyzing proteins: RAG for facts, a QLoRA-tuned model for behaviour, and live Biopython/gemmi/DSSP/PyMOL tool calls for structural truth. github.com/bellcheddar/chatPDB
- ●ChemSage # A hybrid, chemically aware LLM for drug discovery: RAG for facts, a QLoRA-tuned model for behavior, and live RDKit/PyMOL tool calls for chemical truth github.com/bellcheddar/ChemSage
- ●MicroPlastics Blaster # A browser-based arcade game by Elora Therapeutics — the biotech developing first-in-class enzyme therapy to remove microplastics from the human body. Fire enzymatic blasts at incoming polymer particles, protect the cell, and climb the global leaderboard github.com/bellcheddar/microplastic-blaster
- ●PANTS # PETase ANnotation and Triage System: mines metagenomic sequence space for PET-degrading enzymes that work at 37 °C in serum rather than at 70 °C in an industrial reactor, with predicted structures superposed on IsPETase and the catalytic triad highlighted github.com/bellcheddar/PANTS
marc@mdeller:~$ top -bn1 | head
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marc@mdeller:~$ cat links.txt
blog structural-biology publications structures projects patents vibe-coding about-me